YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sptl-1
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.31
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFLPDSWHF YIETLLVALL AYVVMRNRSK RQQEKLSKKL TERQKDELIA DWTPEPLVPE  60
   61 TPQDHPVLNP KYADGKMTKD VSIDGEKYLN MASTNFLSFI GVKRIEDRAK QTIFKYGVGS 120
  121 CGPRGFYGTV DVHLDLEKEL AKFMGCEEAV LYSYGFATVS SAIPAYAKKG DVIFVDEGVN 180
  181 FAIQKGLQAS RSRVEYFKHN DMEHLERLLL EQEQRDKKDP KKAKSVRRFI VVEGLYVNYA 240
  241 DLCPLPKIIE FKWRFKVRVF IDESWSFGVI GKTGRGVTEH FNVPMEDVDM VMASLENALA 300
  301 STGGFCVGRS YVVGHQRLSG LGYCFSASLP PLLATAASEA ISIIDEEPSR VQKVTEMAIN 360
  361 GQKKLQDALS GSKFSLQGCP ESPMKHIYYN GEDEEKQLDT FVETVFTKNH LLLTRARYLD 420
  421 KDELFKIRPS IRVMFQHDLT EEEIQRAVDA IRVVAHKF

Type	Start	End	Confidence
Cytoplasmic	1	6	0.31
Transmembrane Helix	7	25	0.78
Non-Cytoplasmic	26	458	0.54