YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	srbc-10
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFTTKSLAI ESGNLMNLSA VVITSIGILS SFFTIFMNIY FIKKITRIRH RMIFFFYRIF  60
   61 VDISYGVLAC AYMIFCILYS YFTEELREKQ GFIVYLGFPL QSVAAIRTII AVAISIERVL 120
  121 ALCTPVLFHN YRHRFPSIII LILAVCSGIF EDLVLFQSCT LNLSNIPRNC GVLRCAVDKC 180
  181 FFDHWADRSI MYALNFLCSG LLSIKLIFFN KSLNGQGEHS KASVNHIALL DAANVFLCDF 240
  241 LPNSISNYAA QFEFSSFQNI GPYIYIIKLF GIAIETCFIC WILKLKNTQY QPNTVLPLQK 300
  301

Type	Start	End	Confidence
Non-Cytoplasmic	1	19	0.92
Transmembrane Helix	20	42	0.93
Cytoplasmic	43	58	0.85
Transmembrane Helix	59	82	0.86
Non-Cytoplasmic	83	102	0.74
Transmembrane Helix	103	122	0.79
Cytoplasmic	123	134	0.80
Transmembrane Helix	135	156	0.89
Non-Cytoplasmic	157	189	0.95
Transmembrane Helix	190	209	0.92
Cytoplasmic	210	223	0.86
Transmembrane Helix	224	245	0.70
Non-Cytoplasmic	246	263	0.75
Transmembrane Helix	264	283	0.89
Cytoplasmic	284	300	0.86