YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	nkb-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKKVDENAT LMNGVETTGP ARDDVPETFR EFLYNKKNGT VMGRTGKSWF QIIVFYIIFY  60
   61 AFLAAFWLTC LTIFMKTLDP KVPRFYGKGT IIGVNPGVGY QPWLKERPDS TLIKYNLRDQ 120
  121 KSYKAYLEQM KTYLTKYDSN ATETRECGAG DSNDDLEKNP DALPCRFDLS VFDKGCSEKS 180
  181 DFGYKSGKPC VIISLNRLIG WRPTDYQENS VPEEVKDRYK AGSIAINCRG ATNVDQEHIG 240
  241 KVTYMPSNGI DGRYYPYVFT KGYQQPIAMV KFDTIPRNKL VIVECRAYAL NIEHDISSRL 300
  301 GMVYFEVMVE DKPVEEKKEL

Type	Start	End	Confidence
Cytoplasmic	1	51	0.76
Transmembrane Helix	52	75	0.89
Non-Cytoplasmic	76	320	0.79