YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	dhs-22
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGADAEEHG GFLFFVLASS VVFIVLFFTR RYFKGGQFNE RVSAKGLVAV VTGSNCGIGF  60
   61 ETVRELNLRK ADVYMLCRSE EKANEAKRML VRQGCDATRL HFIECDLTDF ESVRRAAKET 120
  121 LESTDTIDIL INNAGIMFQS KHEQTKDGHE KTWQSNHLGP FLLTELFLPA VKKSSYARII 180
  181 NVSSRIHLKS EKINLATVDD KKSFGMMKSY RQSKLANVMH ARALTKELRK DGAEHVTVNS 240
  241 LHPGVVNTEL ARNTILNTPG IKQITAVFRW FLMKTSRDGA QTSIFLALGK KIGGISGKYF 300
  301 ADCKLTQENP LALDDQACQD LYNYSLECTG LAK

Type	Start	End	Confidence
Cytoplasmic	1	8	0.43
Transmembrane Helix	9	29	0.90
Non-Cytoplasmic	30	333	0.61