YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gnrr-2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLILPNSTP PFINPLDEIS NQETLGHVPS DYAQMLLYGI FALIGLPVNI STLIYMLKRY  60
   61 RHAKSFLLLL HINLNISDIL VLGLYVPGLI GWLVTLEWRG GAYLCKFMRF VDAFVFAISS 120
  121 NIMVCIALYR LSALRYPLWV NAVGHSRVPR MLILAWALAV VTMLPQMLVW NEVQFSNITQ 180
  181 CVTVWTEIIN KREKLSESEL RNMKLYSIQN ATIIFYIPLM ILVACYVLIL KDIYKTLNTD 240
  241 TECSSAAYLS EMSSSKTGGK AALHKKDQES FVTLTTRTVR GQEKFRRAKV RSLRITLLLI 300
  301 LTYAVTWLPY NLLSWWMVLH WDSYRENLDS NYILNSLVVL NSVINPFIYG RCQGIRFLFK 360
  361 CRERLAAPKT KKICKLLQN

Type	Start	End	Confidence
Non-Cytoplasmic	1	34	0.98
Transmembrane Helix	35	57	0.92
Cytoplasmic	58	68	0.90
Transmembrane Helix	69	94	0.80
Non-Cytoplasmic	95	109	0.91
Transmembrane Helix	110	131	0.90
Cytoplasmic	132	150	0.86
Transmembrane Helix	151	170	0.92
Non-Cytoplasmic	171	210	0.96
Transmembrane Helix	211	230	0.94
Cytoplasmic	231	292	0.98
Transmembrane Helix	293	313	0.90
Non-Cytoplasmic	314	331	0.88
Transmembrane Helix	332	352	0.82
Cytoplasmic	353	379	0.87