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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: nnt-1
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.55
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVILRSKITR LYWFRLFSNG QKKIEYSKLK VAVPKEIFPG EKRVSLSPNG VALLKKNGIS  60
   61 VLIEENAGVL AGYSNEEYVR SGADVGKHNE VFNTDIMLKV RPPTENEVSK LKSGCTLISF 120
  121 IHPGQNQALL DSLTKTDKTV FAMDCVPRIS RAQVFDALSS MANIAGYRAV IEAANHFGRF 180
  181 FTGQITAAGK VPPAKVLVIG GGVAGLSAIG TSRGMGAVVR GFDTRAAVKE HVESLGAQFL 240
  241 TVNVKEDGEG GGGYAKEMSK EFIDAEMKLF ADQCKDVDII ITTALIPGKK APILITEEMI 300
  301 KSMKPGSVVV DLAAESGGNI ATTRPGEVYV KHGVTHIGFT DLPSRLPTQS SELYSNNIAK 360
  361 FLLHLGKDKT FFVNEEDEVA RGALVVRDGQ MKWPPPPINF PPPAAPKSDK PSENTALVPL 420
  421 TPFRKTANQT LLLTSGLGSV SLLGIAGTNP QISSMSTTFA LAGLVGYHTV WGVTPALHSP 480
  481 LMSVTNAISG TTAAGALCLM GGGLMPQNSA QTMALLATFI SSVNIGGGFL VTKRMLDMFK 540
  541 RKDDPPEHNY LFSIPAAVFL GGYGYGVYTA APLIHSYAYL GSSLCCVGAL AGLSSQSTAR 600
  601 VGNALGIIGV TGGIGATLGL LQPDFNTLCQ MGGSVAMGSL IGLGIANRIK VTDLPQLVAA 660
  661 FHSFVGLAAT LTCLANFIQE HPHFLEDPSN AAAAKLALFL GTYIGGVTFT GSLMAYGKLQ 720
  721 GILASAPTYL PARHVLNGAL LAGNVGALGT YMYSTDFGTG MSMLGGTVGL SSLMGVTLTM 780
  781 AIGGADMPIV ITVLNSYSGW ALCAEGFMLD NSLLTVLGAL IGSSGAILSH IMCKAMNRSL 840
  841 LNVILGGVGT KSKGTGEAKA IEGTAKEIAP VETADMLLNA RSVIIIPGYG LCAAQAQYPI 900
  901 AQLVKELQQR GVRVRFAIHP VAGRMPGQLN VLLAEAGVPY DIVEEMEEIN EDFKETDVAL 960
  961 VIGSNDTINS AAEDDPNSSI AGMPVLRVWN SKQVIIVKRT LGTGYAAVDN PVFFNENTQM1020
 1021 LLGDAKKMSE KLLEEVKSKP M

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle