YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	cgef-1
Protein type:	Globular with Signal Peptide
Type Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRTLPRFLS FRRSKRRLIT SVSAPLIVMN YHDGHQYELD SKDVPSCSGE STPAGTLSPR  60
   61 RETREVTNAF DEMIATEISY VADLKDIIIH YLEPFEATEN QNSLPDTLRG KPDCLFGNVR 120
  121 ELYKFHHRTV LEDLVAARST AEMCRVLMQH RNQIYVTYRT YCQIHGSNQK VRDSVKNHPF 180
  181 FKECQRNANH NMDMSSYLLK PIQRIMKYQL LLGNIMDDCP ADVRDEVAMT RDSMVELLNQ 240
  241 IDASMQQLHI SGYNGDLKSL GLLRLQTECD VFTYNRKKKA KLSRAQKRFI FFFDGAVMFC 300
  301 KKRVSNPGTT LNSEPEYFEH KFCIPIISLG YDTSSRTGAS RFEVWDDAKT DAYVIETIDQ 360
  361 TARTKWIQRL GKSETAQDAC LENRQRPKSW ASTVSNESSC SSSTRESDST DSTMDTNGNT 420
  421 QTTQVDVPYS PTLDSSIDLS MDTTTPLRTS EINNEVELVD SC

Type	Start	End	Confidence
Signal Peptide	1	34	0.81
N-region	1	25
H-region	26	31
C-region	32	34
Cleavage Site	34	35
Non-Cytoplasmic	35	462	0.99