YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ncx-9
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	46	0.68
Transmembrane Helix	47	72	0.83
Non-Cytoplasmic	73	125	0.70
Transmembrane Helix	126	148	0.86
Cytoplasmic	149	161	0.72
Transmembrane Helix	162	179	0.94
Non-Cytoplasmic	180	187	0.73
Transmembrane Helix	188	209	0.91
Cytoplasmic	210	429	0.92
Transmembrane Helix	430	451	0.92
Non-Cytoplasmic	452	458	0.92
Transmembrane Helix	459	481	0.92
Cytoplasmic	482	490	0.88
Transmembrane Helix	491	507	0.90
Non-Cytoplasmic	508	514	0.60
Transmembrane Helix	515	540	0.74
Cytoplasmic	541	557	0.72
Transmembrane Helix	558	581	0.87
Non-Cytoplasmic	582	594	0.87
Transmembrane Helix	595	616	0.91
Cytoplasmic	617	625	0.81
Transmembrane Helix	626	648	0.92
Non-Cytoplasmic	649	651	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCSSEECLID KSWTSEEKCE YIKCNQDSCE GGGYLTWSHY VKCQYNIGVR VILIILGILY  60
   61 LIILFVIMSS IADDFFCPAI SGIVSHLRMS ESIAGVTFLA FGNGAPDVFS SISSVLTTPK 120
  121 PKADLALGDL FGTSIFVTTV VLAIIIFTKS FKVAIIPTLR DLIFYMTTLA FIVFCFLKFD 180
  181 KIEVWMPATF LGIYGVYVVT VIILGIYRTH RKKRNLKKKN KELEDFLSRP SSAASTTPIF 240
  241 GAMKLKEETI SVSALFHFMI GYSQFIKNLT RANLKRTTNN NNNDNKNEKR GIVNLGFSEP 300
  301 YSIPSERKIS TIFKQNTFET DLESLESLAD LDGSDDEGRE EKFGYAHHTV FTSHDQISLV 360
  361 ASEIEEIEIT TWRSWDWVWD LFNHLKSWPS RDEFSEMNIF IKIVTVIKVV PVFFFKLTVP 420
  421 SNEMSWCKPL FILHCFASIQ FALFSIQIIT LKPFDGSPGL WLYGLGFSAI LAMVAMYFLP 480
  481 LSKEQKYYKE IYSYLGFLMS IAWIYATSNE IVSVVTMIGV VTGLSMELLG LTIMAWSNCI 540
  541 GDIVADIAVV KQGYPKMAMA AAIGGPLFNL LIGFGLPFTI AAAQGKEMEL LINPVYRLLM 600
  601 LFLGISLVTT FVALFIQRFT VRRPHAVLLI FIFVVFLIFI CLAEFHVLEW N