YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE08131
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	16	0.97
Transmembrane Helix	17	37	0.95
Non-Cytoplasmic	38	65	0.93
Transmembrane Helix	66	86	0.90
Cytoplasmic	87	93	0.70
Transmembrane Helix	94	113	0.89
Non-Cytoplasmic	114	120	0.72
Transmembrane Helix	121	140	0.95
Cytoplasmic	141	157	0.87
Transmembrane Helix	158	181	0.85
Non-Cytoplasmic	182	192	0.78
Transmembrane Helix	193	214	0.94
Cytoplasmic	215	248	0.97
Transmembrane Helix	249	270	0.89
Non-Cytoplasmic	271	281	0.83
Transmembrane Helix	282	302	0.93
Cytoplasmic	303	310	0.87
Transmembrane Helix	311	332	0.94
Non-Cytoplasmic	333	338	0.85
Transmembrane Helix	339	361	0.90
Cytoplasmic	362	378	0.88
Transmembrane Helix	379	398	0.94
Non-Cytoplasmic	399	418	0.91
Transmembrane Helix	419	438	0.95
Cytoplasmic	439	467	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKHSTENEY RVYKERWFIL LATTALICSN IMQWVSFSAQ IDQTNMFFCG PNEYKNCSAA  60
   61 FLSNQIYQIV AVIVSIIGMY FATVFGTLPT LRLSAVFNIV GAAIRLIASL PSLQNFFWRQ 120
  121 FLMIIGTSIA AAAQMYFVVF SKIAESWFYP RHRASANVAC SNSLELGVVL GTVLPSIIVP 180
  181 ASFTKDIVSS WTFFLLNSII AVVCIIPLFL LFVLCRRSVP KTPPSASSQH ESSGPVTSGI 240
  241 FKCLKDRQFL IQIFVYSINF AIANGLIYTS NAINYRGYNL KGYPIAIATM VCMFSAYFVG 300
  301 VIADRTRKFK LIAIINALVV AVCVLVLRLY LIKTYTGWYD SVIVCTLLSI IMSCCAIHTP 360
  361 IGNEMGVETT YPVQESISTG VLNTFGQAWL FCLYFIMYSL QESNWVYKNN RKGGSWELAL 420
  421 DFWAGMSILN FIVAVIFLRP RYNRLQMEEE AQNTREAIRD SVYTICK