YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ugt-27
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.53
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLFFYFLRF LLIFQVNSIN VLVYSPAFAA SHTNFMARLA DTLTEAGHNV TFLVPIVDVA  60
   61 RTKQLGVHVT TDVIIVEKDE HTTQESVPFD DSMEAYWTEE THSSNVGESF QWFFDGMKLG 120
  121 CENLLRRHEI LDQLKSRNFD VAIVEPLSVC GLGLAKKLEI GKTILASSCA YYDYLFRHIG 180
  181 EPDVHSYLPS LMSTTGDVMT TFERLENHRV AEAMATAMYK MFDSEKAIYR KHFGDEIPDW 240
  241 RDLLPAASLY FTNSNPYLDF PRPILQKTVS IGGISVDTKK IKSQELDKEW NHILNKRNLN 300
  301 MLISFGSMIH SSHMLDDAKK NLIKVIKSEP NVTFIWKYET NDTSFAFGID NIYFSKWVPQ 360
  361 SKLLNDARLT AFLTHGGLGS TNELAHFGKP AVMVPIFGDQ YRNGHMLQRH GCAIIVQKTE 420
  421 LSNWKIVSSA VKSVLYDENY KKNAAHLADL LQNQPVKPKE IVVKYVEFVA RFGPFPEMDA 480
  481 YGRQLNFIQR NLLDVYLIEL FGHFLFFLII FCLIPLQLKR WLIKRT

Type	Start	End	Confidence
Signal Peptide	1	29	0.49
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	494	0.99
Transmembrane Helix	495	516	0.91
Cytoplasmic	517	526	0.85