YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	srh-49
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFPTSLQDY YATNYTRCSE LFSIFSTSEF LSFGAKSQFF VLVPINLFGF YCILFKTPKY  60
   61 MSEFQFHLCH LQFWFTVLTI FYTILTTPYH FFPASVRCSV GLFRDMNISS TYQLLLINIV 120
  121 TGGIVSAVIL LFENRHKHLV PPTDIFYKIN GVHRLILGIF NFLLGSLGAW TIFLQDGNQE 180
  181 LVKMEYLKLV PCPTKLYFDE CSVAIPSAKN IWALGVGPAG CLIPIQVIFF ISHSLMYLRK 240
  241 IQNINTFSKR TKKLQKSFFR AGIAQVTSPI LVIVVPLFLL TYILITKQYL PGAMNICILC 300
  301 IPSHSALSTG SLILFNVPYR DFVRHKFKIT ANSVQRNSRV AIVSS

Type	Start	End	Confidence
Non-Cytoplasmic	1	34	0.88
Transmembrane Helix	35	55	0.86
Cytoplasmic	56	67	0.85
Transmembrane Helix	68	91	0.82
Non-Cytoplasmic	92	110	0.94
Transmembrane Helix	111	132	0.94
Cytoplasmic	133	151	0.94
Transmembrane Helix	152	174	0.92
Non-Cytoplasmic	175	213	0.97
Transmembrane Helix	214	237	0.87
Cytoplasmic	238	257	0.95
Transmembrane Helix	258	283	0.88
Non-Cytoplasmic	284	291	0.83
Transmembrane Helix	292	317	0.83
Cytoplasmic	318	345	0.94