YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	str-225
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGKEWSALL QLVQHSTAVF SIIINTFLIY LILTKSPKQL GAYKWLMVYI SVFEIFYSIL  60
   61 DVVLVPQHYS HGSTFLVIVG IKEKILGPGG LLILNACYWG CYGASMAVFS LHFIYRWLVV 120
  121 TENPLLETFN GWKIILWFSI PLWYALVWIS TGYILSAPNE STSRYIKDSV KEIFGLEFDE 180
  181 YVYLGPYLYE KAVNGNIHVA IKALLSLGII SVTIVSSLII VLAFGILCYQ KINQLVATTA 240
  241 ASVKLIKLQR QLFYALVVQT IVPFVLMHIP GAIMIAFVFL DIDLGVYSAV LSMTIAIYPA 300
  301 VDPIPTLIIV ENYRKTILEF CGCVKKSRIS VTSTVERPKS VMISSNI

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.92
Transmembrane Helix	12	34	0.89
Cytoplasmic	35	44	0.83
Transmembrane Helix	45	65	0.91
Non-Cytoplasmic	66	95	0.86
Transmembrane Helix	96	115	0.93
Cytoplasmic	116	133	0.75
Transmembrane Helix	134	155	0.87
Non-Cytoplasmic	156	203	0.93
Transmembrane Helix	204	229	0.87
Cytoplasmic	230	251	0.90
Transmembrane Helix	252	276	0.85
Non-Cytoplasmic	277	284	0.66
Transmembrane Helix	285	308	0.74
Cytoplasmic	309	347	0.89