YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	str-227
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGKEWSALL KLIQDVSAVF SIVINTFLIA LILTKSPKQL GAYKWLMIYI SVFEIFYSIL  60
   61 DVVLVPQHYS HGPTFLVIVG LKDKLFGPAG LLILNSCYWG CFGASMAVFA VHFVYRWLVV 120
  121 TEHPLLETFN GWKIWIWFSV PMWYGLTWIC TGYILSAPNE HTSRFIKDNV KEIFDLEFDE 180
  181 YVYLGPFLYE KTDNGTIDVH IVPFIGLGII SGTIVSSIII VLVFGILCYQ KINKLVATTA 240
  241 ASAKLIKLQR QLFYALVIQT LVPFILMHIP AAIMFAFVFL DIDLGVYSAV VSMTIAIYPA 300
  301 VDPIPTLVIV ENYRKTIIRY LKLDCVKRSS VAVATSTTEA RSAKASDPVP S

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.91
Transmembrane Helix	12	34	0.85
Cytoplasmic	35	44	0.82
Transmembrane Helix	45	65	0.91
Non-Cytoplasmic	66	95	0.87
Transmembrane Helix	96	115	0.94
Cytoplasmic	116	133	0.85
Transmembrane Helix	134	155	0.93
Non-Cytoplasmic	156	204	0.96
Transmembrane Helix	205	229	0.89
Cytoplasmic	230	251	0.94
Transmembrane Helix	252	274	0.90
Non-Cytoplasmic	275	285	0.69
Transmembrane Helix	286	309	0.77
Cytoplasmic	310	351	0.91