YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	stdh-1
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIEWFATGV GAVVVLYILY HFIRITLNIL GPYVFCQPID LKKKAGASWA VVTGATDGIG  60
   61 KSYSFELAKR GFNVYIVSRT QSKLEHTKKE ILEVHPDIEV RFATFDFTNP SVSDYEKLLS 120
  121 KLNEVSIGIL INNVGMFFDY PEMLHKINGG IDSIANVTII NTLPATLLSA GILPQMVPRK 180
  181 AGIIVNIGSV AGLATMAEWS VYSATKKYVE WITGCLQKEY GHQGIIFQAI TPAMVATKMA 240
  241 GNPNTSFFTP DSDTFAKSAL NTIGHASQTT GYITHQIECE MLKLLPDFVI DRSIKQTSAQ 300
  301 LREALAKNEN KPLM

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.67
Transmembrane Helix	5	25	0.68
Cytoplasmic	26	152	0.60
Transmembrane Helix	153	173	0.46
Non-Cytoplasmic	174	181	0.62
Transmembrane Helix	182	202	0.51
Cytoplasmic	203	314	0.52