YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	tag-293
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYESAVSSKT QRVIVTLIIF AISLTGLVAN LLVLMFAKTL KIFQNSFGRL SASQSFAEAV  60
   61 LCAVFLCFYC PMVLLFASNI YEKFIFLRGN ARFTPETCKR FVLLYRKILK THFFNDKFIY 120
  121 TVIIFTQSSS LRLSDMFGLL VSCILAFTVP ESAFADISGD LNCTQYNGTF FVWTPAAVAC 180
  181 SNAVSDASCT ALYPTEDEQG YPAAGNNAGR PLACFTTAAE TPAPVDGDMK KAALTNCAKT 240
  241 CGFCCNTDDY SCPNAQFPRL NCDTITNNQC KDPNWRTIIA TDCPSACGFC NQGGCVDAVV 300
  301 DCANDRSICQ SVGMQEFVNQ NCQRTCGRCG SSTGNPSVPG GGSCTNYQAD SSTACAAWAG 360
  361 NGFCTNTFYT EAQRKASCAT TCRLC

Type	Start	End	Confidence
Cytoplasmic	1	12	0.82
Transmembrane Helix	13	37	0.89
Non-Cytoplasmic	38	55	0.78
Transmembrane Helix	56	78	0.91
Cytoplasmic	79	135	0.76
Transmembrane Helix	136	150	0.55
Non-Cytoplasmic	151	385	0.67