YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	cln-3.2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.67
Transmembrane Helix	16	36	0.80
Non-Cytoplasmic	37	62	0.58
Transmembrane Helix	63	83	0.65
Cytoplasmic	84	91	0.63
Transmembrane Helix	92	112	0.77
Non-Cytoplasmic	113	116	0.67
Transmembrane Helix	117	140	0.84
Cytoplasmic	141	147	0.76
Transmembrane Helix	148	170	0.91
Non-Cytoplasmic	171	181	0.74
Transmembrane Helix	182	202	0.91
Cytoplasmic	203	343	0.70
Transmembrane Helix	344	361	0.75
Non-Cytoplasmic	362	366	0.51
Transmembrane Helix	367	389	0.82
Cytoplasmic	390	402	0.75
Transmembrane Helix	403	426	0.85
Non-Cytoplasmic	427	435	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVASGGGRR PPRNSVAFWL LGLCNNFAYV VMLSAAKDIL EKDAKHIEKP CREHVTTREC  60
   61 QMMSTGSVLL ADIIPALLIK ITAPMFIHRV PFGIRHSIVV LLQASSFLIV GISDSTALAL 120
  121 FGVVLASFGS GLGEISYLAL SSNYPSTVVA SWSSGTGGAG LIGASAYALL TDSKLLAISP 180
  181 KHTMFIMLTL PALFSVSYWS ILKIPHSVQR AHFLQPSTWL VTGDFIPADD MRREEVEEEE 240
  241 GLLGIREDRE NSVDVTSRRR QTSTTLERVL PLLKFMIPLI SVYLAEYYIN QGLLELLEFD 300
  301 CSHGFSMSSE SQYRWFQVTY QLGVFISRSS SNYVTIPTQY LKSLAVLQIF NAGFFTITAI 360
  361 YSFLPHILIA FLVILFEGLL GGASYVNTFR AVHKEIPADS REFSMGVVSI SDTIGIVFAG 420
  421 FLAMPVHNRI CSMPM