YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE07756
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	28	0.98
Transmembrane Helix	29	52	0.85
Non-Cytoplasmic	53	62	0.73
Transmembrane Helix	63	82	0.95
Cytoplasmic	83	94	0.82
Transmembrane Helix	95	116	0.88
Non-Cytoplasmic	117	164	0.91
Transmembrane Helix	165	182	0.95
Cytoplasmic	183	191	0.78
Transmembrane Helix	192	211	0.96
Non-Cytoplasmic	212	226	0.89
Transmembrane Helix	227	249	0.87
Cytoplasmic	250	267	0.80
Transmembrane Helix	268	290	0.87
Non-Cytoplasmic	291	314	0.88
Transmembrane Helix	315	338	0.81
Cytoplasmic	339	363	0.84
Transmembrane Helix	364	383	0.94
Non-Cytoplasmic	384	390	0.75
Transmembrane Helix	391	412	0.89
Cytoplasmic	413	442	0.92
Transmembrane Helix	443	465	0.90
Non-Cytoplasmic	466	474	0.85
Transmembrane Helix	475	497	0.91
Cytoplasmic	498	508	0.81
Transmembrane Helix	509	529	0.91
Non-Cytoplasmic	530	534	0.72
Transmembrane Helix	535	554	0.92
Cytoplasmic	555	585	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSHVWQAIT RKKRFEGDSH LDSNLRRCLG LMDITFLALG QMMGAGIYVL TGTVVRNQAG  60
   61 PSIIFSFALA GIAALLSAFS YAEFGARFPR AGSAYTYTYI GFGELWAFIV GWTIPLEYMI 120
  121 GNAAVARSWS AYFDNMLDNY IKNTTIGALG ELSEPGGFFS TYPDILSFLL ICLCACVIAV 180
  181 GPKVSANVNS SFVVLNIVVI FIVIVSGICY ADFNNWTGTT SDGRSMFFPF GLTGTLTGAA 240
  241 TCFFSYIGFE VLATAGEEVK SPHRTIPVAT FLSIGVIMTL YILVSSTLTL MVPYDQVHTT 300
  301 APFAEAFSAR GCTTVMYIIS IGALIGLTNN LVTGVFALPR AVYAMADDGL IFKWLAHVTS 360
  361 STKVPLNAIV IFTLLNAIIA LIFDIEALVE FLSIGTLFAY SFVSGSVLVL RYQSAPIDGD 420
  421 GKRMDNGGEL SSWIPARNFW ESLPAGTSIS LGVAALIGSF FWLAFTFRTG FYEHWYGQIS 480
  481 IGFNGLLIVL VMAFILGHQQ NSLETSFKVP FVPFLPCLSL LVNVFMMAYL TTATWIRLFV 540
  541 WMGVGLLIYF SYGIRHSKEA KKLTTIADIR MSSTFPNKNN RITKT