YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sri-31
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEVVDFEVP WHLIYHYYIS GTIAICLNLL VIYLILFHSG KLDNFRFYLL AFQIWCTASD  60
   61 VNIAFLFQPI FLFQILAGYG HGWFYDWFDF TSFTCFAIFT LLLSGQIEVL TICFFRKHHA 120
  121 IMKLRPTTDK VPYPIIYVLC MCYSIVITLS CYSIRISKEE QWQLIQLNYP SMVPQFQRLR 180
  181 EFSIVRMTYE LITLLVLNAV GTFKTTLVIS VLVFRMYNVL FLMQSQLSRT TLAKHKIALK 240
  241 CLVLQFMTTP ISFLPAFVLL LNVAFPTPYS QEISNFSLMV ATTHSTANCL VVMTTYPEFR 300
  301 KTVMFWKKSR GSRVSISSLR PSNL

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.98
Transmembrane Helix	14	37	0.91
Cytoplasmic	38	48	0.85
Transmembrane Helix	49	72	0.82
Non-Cytoplasmic	73	92	0.78
Transmembrane Helix	93	115	0.93
Cytoplasmic	116	134	0.91
Transmembrane Helix	135	156	0.92
Non-Cytoplasmic	157	194	0.94
Transmembrane Helix	195	219	0.79
Cytoplasmic	220	240	0.85
Transmembrane Helix	241	261	0.92
Non-Cytoplasmic	262	277	0.78
Transmembrane Helix	278	297	0.79
Cytoplasmic	298	324	0.81