YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE07621
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.79
Transmembrane Helix	11	29	0.70
Non-Cytoplasmic	30	35	0.68
Transmembrane Helix	36	55	0.75
Cytoplasmic	56	74	0.91
Transmembrane Helix	75	96	0.97
Non-Cytoplasmic	97	107	0.80
Transmembrane Helix	108	130	0.86
Cytoplasmic	131	142	0.89
Transmembrane Helix	143	169	0.74
Non-Cytoplasmic	170	174	0.83
Transmembrane Helix	175	197	0.91
Cytoplasmic	198	318	0.99
Transmembrane Helix	319	341	0.86
Non-Cytoplasmic	342	355	0.80
Transmembrane Helix	356	379	0.82
Cytoplasmic	380	393	0.74
Transmembrane Helix	394	424	0.75
Non-Cytoplasmic	425	455	0.55
Transmembrane Helix	456	476	0.87
Cytoplasmic	477	482	0.42
Transmembrane Helix	483	503	0.74
Non-Cytoplasmic	504	522	0.47

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLFSSLVHN VRGQLIARII SFAINMYLLR RINNDVLGLV NVRLTLLYSS ILFLTREPLR  60
   61 KAEIIRGSLP KFINLLWLSP IISTVISVVC VYLWYAFSST SDEVSWSVLL SFPISAIIES 120
  121 IAEPFSVISL RLESKCGSLA QHFAIGQGML ICVKRIFVLA GLFMFPGMYH LELFAYAQYI 180
  181 GAIAYLLFNF VAFYIYIRNK SIPELEQFST FSDLFPKFSE GIDRDSIHAV FTMFSHSILK 240
  241 QLLTDGSAYV MTFTELLSLK DQAVYDAVER VGSIIVRTIL SPIDENCNAY FSNTIRKESS 300
  301 VFNKNTDNHD DLVDTLSKVL HVVGVIGFVA CTFGIPYSPV VISLYGGKLL SENGGALLLS 360
  361 LYSGYILVTA INGITEGFAM ASMDNRQIFT HGKFLFVTSI IHLIINYVLC VYMNSAGFIV 420
  421 ANIINMSVRI IYNWRTIREY LGDKCPSFTE VLPTGQTSIF LGVSLLATSF TYLLFATTPG 480
  481 LSYTLAHIAI GAVCLILTAQ DTAQHDSVFT VIVDSLAKKH RD