YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	col-43
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSSDGRTKA YKFVAYAAVS FSIVAVLSVV LTLPMVYNYV SHVRQQMNHE LSFCKGSAKD  60
   61 IFAEVNFMKT HSGPAAPGNR TARQSGYGQP EVNPSANLQC EGCCLPGPPG PAGVPGKPGK 120
  121 PGRPGAPGQP GVPGKPPTAP CEPTTPPPCK PCPQGPPGPP GPPGAPGDPG EAGTPGRPGT 180
  181 DATPGLPGPR GPPGPPGEAG QPGPQGDAGT PAQSEPLTPG APGEAGDAGP AGPPGPPGAP 240
  241 GNDGPPGPPG PKGSPGPDGP AGVDGQAGPP GPPGQAGTPG EKGICPKYCA LDGGVFFEDG 300
  301 TRR

Type	Start	End	Confidence
Cytoplasmic	1	12	0.90
Transmembrane Helix	13	37	0.88
Non-Cytoplasmic	38	303	0.94