YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE07601
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASQYNCTQF LNEFPEPKTE AAINNGIVSF MDALVKAYRP FHYYVLTFIV IFAFFANILI  60
   61 LILLTRKEMR YSGVNVTMML IAVCDLGCAI AGLSQLYLRN FSDNYSSYQT AYAQFIVYYC 120
  121 QIAFHAESLY LAVGMAFCRV ITLSSASDSR VYADGSVFLD ISPLSLANDC LFLKTSIFFS 180
  181 GSCFKILPSI LMSMFSIIIL IRIKAGKQRS NSLSHNQTDQ DAQIDRSTRF IQVVVVVFVI 240
  241 TETPQGFFSV LGSISINDYI NYYQHLSIFM NILAFFNTTT SFIIYSTLSS KFRKLFAQLF 300
  301 VPDVILEKYG RVFQKLELSF

Type	Start	End	Confidence
Non-Cytoplasmic	1	40	0.82
Transmembrane Helix	41	64	0.91
Cytoplasmic	65	73	0.76
Transmembrane Helix	74	97	0.88
Non-Cytoplasmic	98	121	0.77
Transmembrane Helix	122	143	0.63
Cytoplasmic	144	150	0.59
Transmembrane Helix	151	172	0.49
Non-Cytoplasmic	173	183	0.62
Transmembrane Helix	184	203	0.89
Cytoplasmic	204	229	0.90
Transmembrane Helix	230	252	0.81
Non-Cytoplasmic	253	265	0.78
Transmembrane Helix	266	288	0.89
Cytoplasmic	289	320	0.97