YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE07547
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	83	0.99
Transmembrane Helix	84	105	0.91
Non-Cytoplasmic	106	111	0.73
Transmembrane Helix	112	131	0.91
Cytoplasmic	132	139	0.81
Transmembrane Helix	140	159	0.95
Non-Cytoplasmic	160	165	0.67
Transmembrane Helix	166	187	0.91
Cytoplasmic	188	193	0.95
Transmembrane Helix	194	216	0.89
Non-Cytoplasmic	217	428	0.99
Transmembrane Helix	429	451	0.91
Cytoplasmic	452	471	0.86
Transmembrane Helix	472	489	0.92
Non-Cytoplasmic	490	499	0.84
Transmembrane Helix	500	521	0.93
Cytoplasmic	522	529	0.76
Transmembrane Helix	530	549	0.90
Non-Cytoplasmic	550	555	0.69
Transmembrane Helix	556	577	0.88
Cytoplasmic	578	584	0.82
Transmembrane Helix	585	607	0.89
Non-Cytoplasmic	608	613	0.80
Transmembrane Helix	614	633	0.93
Cytoplasmic	634	708	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFHDDSHIL SQLGILDSHE RSPKRETTSS VAEKKFVDVK LTASMSDDDE DDDEDLVFDR  60
   61 NNLLSSNKRQ NASLIRGRAD NQTIRLLILL LLFLIAGLVS SSTTLSVCSV RHEVIACLWT 120
  121 CIGMFCGAWS TKLTSARSNL MLFLLSALLT LLVNLFLAFN FAFLFAVRGF FVGATLYGGA 180
  181 LIWFAFWRKQ LRKFLILLLF FSAGGLLAMT LKTTAFNDAT NSLADMSIVS RSIQNTVSRL 240
  241 KRASDDEKTL LPFVAAVIDN STQAANVTDD SIVKKPEVAT GTVQKLKTKT EINVEKEKEV 300
  301 EEKKKDSESE LVQVIDGSTG NSTGSTVETT PSTSTTTTSS TTSTTTTTTT TTETPSTTVI 360
  361 TTTIPSTTSE PEATIDVKTR DSKEDTNGVL PTSSAIETPP YPENCPEDSL FLPGTIAASE 420
  421 ETSSSFIKTF ASFGVVIYIV SYALCCLPCG LRPDAKVKKL ESDSVVGLGM RLRIFVATIQ 480
  481 TIIGFVQQIK HFHSSAQPSA FTEHIVICVF VMIMSFILVF AGHRVGTIES VISSFLLTAF 540
  541 GELILLFSST SQFGNITSIC GLYALWISLF FVVELFLQVR CTVQLAYFLI AWIVGRAMAC 600
  601 LFALEPIFNG LEQTFTFILT ICIGVLLFNA IRMLQKSKRL KEILDNSSTP IGGSGINSAT 660
  661 GEYISLTAQD VLDDDDLLDE DEMDRSSMDL DFELEQLGLE PVGVGSRA