YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE07451
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.56
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHLLIVLLIF TVFFADVYGA IQTWEKEFAC PEGLVINGYQ VKSQTKQGWF TYDYGVTDMV  60
   61 FFCNTPDGKN QNTDKNITRG NFYPYDNDIW RKIQWCPTGT VVIGMANKLD FGKFDNAGIT 120
  121 DICSYCGRPE DDRTKKTYSA WEDLNTHGSW ARDQMCDVGS ALANNQSPDN FIVIDNNSPY 180
  181 GYWRQITWCP KGSVIIAIQE KVDFEKLDNA GITNLAAKCG RPQDDRTVQP SFASEFFYAH 240
  241 GKWTQENWCD VGSVLASFNP KSTRRRGLER KKLKEKKKLI SLNQLITAAT MHLLIALLIF 300
  301 TVFYTTAHGN LPTREDYIAC PKGSVINGFQ LKLETKRGVL SLDHGVTELI FFCNPPDGNT 360
  361 LSIDNKIVIY NDSPYGYWRS IQWCPKGSVI IGITEKIDSE KFDNAGITNF GARCGRPEDR 420
  421 TEQPSFLFGM VEYNITFIIS ACSECSNLEC SNSNTLNAAQ LKYEKVTAKM YISQVHLSWF 480
  481 CATVDDVAVV DEDGRAGEEE VEIRTVMR

Type	Start	End	Confidence
Signal Peptide	1	19	0.98
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	287	0.98
Transmembrane Helix	288	307	0.53
Cytoplasmic	308	508	0.54