YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE07192
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFVNWAQFY IELNCKFSFS MATTAVFLCG HLGALSVILN LFVIIALLRH RRRVLSNVFY  60
   61 VIVLHCAVLD VARGVCLILY GLPYFANSFY NINLDIHTRI HLFQLSRFAL VILRVCNLLT 120
  121 IFNLLVFTTN EYIVIRYPLH YRRYFRRKFV LIILAICWTM SIMMALGILY SSSKSQTEWL 180
  181 PPEERGIDFA TITMVLISSL CFVTLGTVVI CYISILRTIR KFKDEGCLNN DESHRIHNRS 240
  241 LHRPINGQGS NCSNGSRGSK WRSVQAMSRH KYIYVIGSVL IVDLLFLCPY SGIQMVSFLH 300
  301 INNFLQITHG STLIRWWLQV LIGVHSVCQP LCYFRMTEFR RLACCNPRRP WNRTKSFSQM 360
  361 NKSFANTRSN VREDENGNNT AEIEVTPNEP LLRNGENGGT PSRRSPTIAW TRGESVRFRT 420
  421 YGNEIGHHIP TKKNESKEPQ CEIEMIPIST GSASPSDDSA VQIPIIDDSP LV

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.95
Transmembrane Helix	21	48	0.83
Cytoplasmic	49	57	0.90
Transmembrane Helix	58	82	0.89
Non-Cytoplasmic	83	109	0.88
Transmembrane Helix	110	129	0.94
Cytoplasmic	130	148	0.91
Transmembrane Helix	149	170	0.96
Non-Cytoplasmic	171	189	0.93
Transmembrane Helix	190	213	0.92
Cytoplasmic	214	271	0.97
Transmembrane Helix	272	293	0.95
Non-Cytoplasmic	294	312	0.92
Transmembrane Helix	313	333	0.87
Cytoplasmic	334	472	0.94