YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	col-140
Protein type:	Globular with Signal Peptide
Type Confidence:	0.98
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKLILVGSS IALTCCLVTV FTMGSLLQEI SDMKMEVEDG MMEFREIHQD TWNRVVRKHI  60
   61 NPTGETDAPP NFQTLFGIRR SRQSGFPEQC NCGPRSEGCP PGPPGTPGEQ GPQGESGPDG 120
  121 DDGKPGLAGE VVAIVHDLPG GCIQCPPGRP GPRGPPGEVG PAGPSGDNGR KGPPGPPGGP 180
  181 GGPGEGGDGG RPGNPGRPGP AGPRGEPGTE YKPGQPGRPG PPGPRGEAGP AGQPGSPGND 240
  241 GESGKPGNAG RPGPPGAPGK NGTPGVRGED AAPGPDAGYC PCPARAYKA

Type	Start	End	Confidence
Signal Peptide	1	24	0.96
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	289	0.99