YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7499691
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREPCLSRSS EAMLGVPFID RWLSETFKPK TFDDAVDRLS YVTTATLLAF FSIMVSCKQY  60
   61 VGSAIQCWMP MEFKGGWEQY AEDYCFIQNT FFIPERSEIP GDVEDRQKAE IGYYQWVPIV 120
  121 LAIQAFMFYL PSWIWSSLYK QCGLDFPSVI SEAEALRSQD SETRTKGVNK LVDFIGDILD 180
  181 TRSKNEYGRF YCYRFGKGLG SMTSMLYICI KLMYLANVFV QFIILNKFLG NETFLWGFHT 240
  241 FADLYAGREW QDSGVFPRVT LCDFSVRKLA NVHRYTVQCV LMINMFNEKI YLFIWFWFVF 300
  301 VLITTFINTL CTIYRLSFDS SRHNYIRSLL SGPVNNFKDE KAMIASFANN GLKQDGVLLM 360
  361 RFIDDHAGAM VTKEICEELF KKHGENLQHN RDFHHGHSTK STSPGLEEGH HEHLYTPEKM 420
  421 KLMAPDYPIK HA

Type	Start	End	Confidence
Cytoplasmic	1	40	0.82
Transmembrane Helix	41	62	0.55
Non-Cytoplasmic	63	113	0.59
Transmembrane Helix	114	135	0.70
Cytoplasmic	136	203	0.74
Transmembrane Helix	204	225	0.78
Non-Cytoplasmic	226	291	0.75
Transmembrane Helix	292	314	0.92
Cytoplasmic	315	432	0.79