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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: crb-1
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.96
Topology Confidence: 0.93
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYQHFLIFC TLVTNALCNR ACSRNTCLNG GTCTVNDETR MFQCECPKGF SGLLCQDNCS  60
   61 LHCLHGNCVK GTFGEETCQC SEGWMGSLCD NLVTDDDTAQ KCSPQCGDDE RCTKGADGSY 120
  121 ICQSNEPSCA THTCQNNGTC VAENGNVKCA CPPGFVGDHC ETDEDECKEN FCQNGADCEN 180
  181 LKGSYECKCL KGFSGKYCEI QDKKQCTSDY CHNNGQCIST GSDLSCKCSP GFDGAFCELK 240
  241 AEVNECICEN PAHVCSLVNG TSRTTQCECP SGFMGADCKE LQARPCDREP CLNGGHCVDD 300
  301 GQNLFTCFCL PSFTGIYCGE PVDCLVNGSD CKNGGKCVFA LAATTCQCPE GFNGSNCEIS 360
  361 NSYRSHPTCS DIRCLNGGSC KLDAEGEPFC VCEEGFDGPF CEPKSGCTIN PCQNGGTCQD 420
  421 ADGQYFCHCT SGFGGVHCET VDEPSTPIPT LGTFPSFTTS GIDGFSQSKI SCEDCVNSSN 480
  481 CLDVESGPVC ICDDGYFGQK CDQKHDKCSK VSCPSGQTCS QVNDNVNITA QCGCEIGHFG 540
  541 QQCEMVTSAT FSAKSLYIHQ SSKFSLGTSS FENIAYELEF SFRTTVENTH LASSENILGE 600
  601 KILSIQLLSG YLVFNMTGNS LEHLLPMRVS DAQWYTVFVK GEDNKIQIEV STENGFSLVQ 660
  661 KSVNGQLEVF LTRFGKISGT HHFIGCMADV RVDGDLIIFA DNKRAIDIRK GCTRSEQCTR 720
  721 AYCQNEGICI DHWESSSCKC KPPYLKPNCV YFLPKTTFGH LDQPSIVHLS TSESENHLLR 780
  781 NHIELSFLMH SGKPDAVLFY IGEKHAADVL TNYLVVKIAG GLITVRYRTG GRREIEFSSK 840
  841 NRVDDNQEHH VQIFLDKTTR QIIIDDLIEC SEPIISRMSQ EFYVDDIVIG ASNVVATDSE 900
  901 FYKGYLQDIQ INQKSVVIHP TSLTIDKIGK LERTQNVIEG AVSDPMCSSS TCKHGECSET 960
  961 FNDFTCRCSD GSTGKLCDKV DYCKDASCMK GSRCENADNG HYCIFPITIS NGSMLTYSLA1020
 1021 PTKFMTLPSI EFSIKAHSQN GHIFTLTIDK STLSAYLFKK RLALATNSGS GTIQKFDSVI1080
 1081 ADGNWHQIIL NPHKVLIDSV KFISDNQLYP AESKSGASLF VGEQEPQEVT FACLDLFKMG1140
 1141 EYPTLSFTKV KIPTNSETWN LTDKASVGTG CMSTDQCGLY STCLNGATCV DIWNKRKCVC1200
 1201 PAGFAGENCE DNVNDCKFVD CGKHGYCLDG IDEAKCICNN GFHGEHCELA KDECEGVECH1260
 1261 NGGKCVKNRS EKIVCQCGNS WMGDSCNVTK TTNCKDSPCQ NFGQCMQKTD TFFECNCMDG1320
 1321 YSGELCEQRD VNECNHYDCN RGHCVMTVSG PACQCEMGYT GRFCEKLLNQ CSSNTCSSRG1380
 1381 ACSPVWNNTV CNCDNNWRGA HCQHQMDTCL DFPCNNDGVC RTNDENTFSC ECQKFFMGTR1440
 1441 CEIEGSCLKA QCVHGECIQL SPETHTCSCN IGYEGDACDK KIDYCKAGPC LNGANCENKL1500
 1501 TGYKCTCAVG FEGADCEINI DECALEFCKN GAKCRDKIND YECVCDGTGF EGRNCTTDIN1560
 1561 ECANPNNCIN GECTNTLGNY KCACRNGFIG PRCSVRNPCT AQIASNNISS VTCVHGKCVN1620
 1621 PVVQIEKNRE VAKYECACDR GYTGPTCSQR IKESAMSNIS YLFGPIIAVV IVFAILGCLL1680
 1681 LFFVIRGNNA MHGHYSPSSH EFTQNRMAMP TVIKLPPQER LI

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