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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: cdh-5
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.67
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTTVRVSPN SQSESLQILV NDEDLQPGMP PATYQYILTG LGATIFAVDQ RGFVYLNVPK  60
   61 IDADPPNPST YQLNVEAREV NTVPTRRSEP VTITIHILDI NDNSPQFEQP IYMANTTASG 120
  121 DERDVVKVVA TDVDSGAFGQ VTYTIAQVTN GGEDKFRYET ATNMLVATGN LVPGERYQVV 180
  181 IEAIDGGGRS SQAIVIVLAL DPMHQTFSSL APLPGMETFM PNPLAMATTP GTMVTSAESE 240
  241 ETIQTFVTEV NENTPPNTVV VSLGDESSRE LTYFNVVGGN EEGKFAIDDA GTIVTAEELD 300
  301 REKTAMYSLQ VETRSRNPDQ HLYWTLVQVT VMDVNDNAPT FTDPQPIRLR LSIDDIEQLT 360
  361 GNMIIGRIGV EDADADDNGR LELRIMPPHN KLFAISNDGI LSVNGDFTAA HFGEHDLTVV 420
  421 ARDHGEPSLE TRARVQISIF GTLITMATVA PTNEVFEYTS SVEEEPQTTN PDEHLQTVTT 480
  481 SPSTKNQVSQ QIFSSFPAPQ VEQTGAPVEP EFPQFPTFPT LSPHPQIDEE TEEDEEVTDE 540
  541 YPDTVATVPT VTVAPDYSEE YGQEASSSSS TILPDVQGVW SEISELPSEN PITYTESPIT 600
  601 ESTAPAPETS PETAPEITPE RGSSAENELY PTEIAPENVE KPTELAPDLS ETTENTENQW 660
  661 LPDVVETSQV ELPSLPTTKM APPQPVPTQS PPLPTPKRLA PVFKPSQITV QIDENESQVE 720
  721 ITKAHATYPD GLSGTITYVL HKGDPSLFSV SSYSGSVNLL RALDAETNST VTIQISTSEA 780
  781 QTLEVDPKLA HFVSITINVA DKNDWIPNFE SASYEFDVKE DTLPGTIVGQ VNAFDQDRDE 840
  841 PNNRIRYRLL SAGGLEAHFN VNAESGLITL ARPIDAFAGE KITLRIEGAD SGMLPLSSTT 900
  901 TVLINVVATS SHLIPDASPV SNTPNEGELQ FSLRNYTASV SEAVRPPHLV QVLSVMNKPT 960
  961 DTRFIICNII SGNYRGAFGI TAGNDGNCEL RTQMELDRET VERYLLNITV TAGAQTDYAL1020
 1021 VSITVLDVND NVPRFVYDSD LGLTTYFGAV SSVANAFTRV LTVKAEDADL GNSSLVNYAL1080
 1081 DPLSAHSKYF SISPFGEIST KQSMSTILSR NRLQFFEFRV SACDSPISGQ QLCSKADVVV1140
 1141 NVIGSTNRFK MIIYGLNPQQ LKKHEKDLVK STRQFTGSCN LLTIEKMIEH TAIENQIRTD1200
 1201 IYWYAVNPTT KKICKKQDIR KLFETSNVQL IAGKVQPWFR LERISEDAGD EGNMSSGGIL1260
 1261 STNWKTSNIL LIILAVTVAL GAIIGICAVC VFWSRYKTAQ RNASNFSHSY PQKLGPIYHP1320
 1321 TMMGVDPRTE YDYETQNVNM LISDEDLTMK SGSIGVPAHQ RMTLMGAGGG PGMGGPGGPQ1380
 1381 NGQGNQSYRT YGYRPAHSTA YEGDFSIEES MYAINPSGRL DPITNSHLNN NSTNRLHSSL1440
 1441 AQIFMQPINV MLAVLLALAS FAQGGRSVAP AGAVTEPTVT QAVPEGSGLS SDVTDRPNID1500
 1501 STDVVSNATS VEDLLGSSTN ANNTGTFNSR TFVIAPMMIL ALVQ

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