YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE07017
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTHDNEYQSA LVFDRIRRLI LNNSNTPITT KELIKHCFHP DVQFLAHMTL KSLDHPGEQF  60
   61 NNSSNQLLLD RAFLNPILTL IFVFVGLVGL IGNLLTVIVI FKTNSLHSHT NYFLANLATS 120
  121 DFCLIVVGVS FDLVNIWNDE EPLDIFGYCS LTSTFISLFT FASILTIVLL TAERFTAICY 180
  181 PFSHRTIFDE KRVKRFILLI WFVALLPSIF IGSMFKRVSQ DFCGFNRQMT YIGRCDLVTS 240
  241 PDSFFRYPFE SAITITFVLP LFFIIYCYFR ILVTLNEMSN STHVHTPVGT ARSDSGAFPF 300
  301 PHTSNNSNTQ SFPLTVHTKN VQPPRSQQAQ KMVIKMLVTV TAVFFVCYLP YHAQRLIVKY 360
  361 NSKDCSNSDF CKLLYPIAGI LQYISASLNP IFYNLMSVRF RNGFKKLIKD VWAHRARSYS 420
  421 NLARV

Type	Start	End	Confidence
Non-Cytoplasmic	1	76	0.79
Transmembrane Helix	77	101	0.89
Cytoplasmic	102	111	0.71
Transmembrane Helix	112	131	0.78
Non-Cytoplasmic	132	150	0.81
Transmembrane Helix	151	172	0.87
Cytoplasmic	173	195	0.83
Transmembrane Helix	196	215	0.93
Non-Cytoplasmic	216	250	0.94
Transmembrane Helix	251	272	0.90
Cytoplasmic	273	332	0.98
Transmembrane Helix	333	352	0.94
Non-Cytoplasmic	353	376	0.87
Transmembrane Helix	377	396	0.73
Cytoplasmic	397	425	0.79