YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE07004
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATLEKKHSF FLLDPFFLLK SPTERARFQF LSLLLFPDFL IKIRLLFQMN ASTNATTTFV  60
   61 PWDHKTLQIV MFLNSKVLIL QIIFGCGGNI LNLMVLLSRA MRSRTNLIFA AMAFADLFFL 120
  121 ILHIPSVLFF IGTIRDAPWY RNGFSQVIAG MLNWSSAVSI WFMMYATIER VQVFRSPFRT 180
  181 SKRSASTRFF ITLFSIAFFC LLLTIVHFIH PKTRAANKYA RYVVYIHMIF VVIIPMFLST 240
  241 SLNILLVCAL RKNSMPLRML NDSHVHQSLI VQRTRTERKV TAMVTVILSS FIACNVPGSI 300
  301 VFVMKESDDT FDDSRRHILM QAVCNSLAVT GKVLNFLLFC LSSEHFRALL KKRDPQAVEM 360
  361 EEMRIVEIET ADRKIKRNWS YVKKNELKFE SAEKAKPSPV VCIKGNDESE INLLEKKTSS 420
  421 ISKYS

Type	Start	End	Confidence
Cytoplasmic	1	27	0.87
Transmembrane Helix	28	46	0.76
Non-Cytoplasmic	47	76	0.86
Transmembrane Helix	77	97	0.92
Cytoplasmic	98	106	0.86
Transmembrane Helix	107	131	0.84
Non-Cytoplasmic	132	146	0.85
Transmembrane Helix	147	168	0.92
Cytoplasmic	169	188	0.92
Transmembrane Helix	189	209	0.97
Non-Cytoplasmic	210	225	0.90
Transmembrane Helix	226	249	0.93
Cytoplasmic	250	279	0.98
Transmembrane Helix	280	303	0.86
Non-Cytoplasmic	304	317	0.91
Transmembrane Helix	318	341	0.69
Cytoplasmic	342	425	0.81