YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	npr-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVENFTDCQ VYWKVYPDPS QSIYAIVPFL TVYLFLFFLG LFGNVTLIYV TCSHKALLSV  60
   61 QNIFILNLAA SDCMMCILSL PITPITNVYK NWYFGNLLCH LIPCIQGISI FVCTFSLGAI 120
  121 ALDRYILVVR PHSTPLSQRG AFLTTVLLWI LSFVVTLPYA FNMQMIEYTE ERICGYFCTE 180
  181 KWESAKSRRA YTMIVMLAQF VVPFAVMAFC YANIVSVLSK RAQTKIRKMV ERTSALESSC 240
  241 AFPSHGLEQY ENELNEFLDK QEKEKQRVVL QNRRTTSILV TMVVWFGITW LPHNVISLII 300
  301 EYDDTQSFFR LYGRDDYDIS YLLNLFTHSI AMSNNVLNPV LYAWLNPSFR QLVIKTYFGD 360
  361 RRKSDRIINQ TSVYKTKIVH DTKHLNGRAK IGGGGSHEAL KERELNSCSE NLSYHVNGHT 420
  421 RTPTPEVQLN EVSSPEISKL VAEPEELIEF SVNDTLV

Type	Start	End	Confidence
Non-Cytoplasmic	1	28	0.89
Transmembrane Helix	29	50	0.88
Cytoplasmic	51	62	0.82
Transmembrane Helix	63	85	0.90
Non-Cytoplasmic	86	98	0.89
Transmembrane Helix	99	122	0.87
Cytoplasmic	123	139	0.86
Transmembrane Helix	140	161	0.91
Non-Cytoplasmic	162	196	0.94
Transmembrane Helix	197	219	0.88
Cytoplasmic	220	274	0.97
Transmembrane Helix	275	296	0.81
Non-Cytoplasmic	297	457	0.56