YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE06880
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLLLSRVLV NVMVLMCFGG ILTNFISFYI YTRKTFRKKS INVLLAALSM SDLCVCVLAI  60
   61 PVFASTQLQQ VIPPTITAMI MVYLYPVTIM FQSVSVWLLV SITIDRYLAV CHPFMVNTYC 120
  121 TRNRALITVG VVVIFSVAYN LIRIWEYTIN FDVAPENRTI EDLVVPKLRA NPHFLLWYQN 180
  181 VATLVSQFAF PLTVLCVLNI QVARTIIEAS EQRRELVASV KREHSTAKMM IMVVLVFLVC 240
  241 YIFSFILNIW EILDKETFGG DIGWFMNDIN NVLIVVNSTS AIVFYYKYST RFRNQARTLP 300
  301 GIRWYASMSK FNVYDTEATS NRTMVTRYKE SMISIRGTST RLSSSHNLLY KPSYSKPCDI 360
  361

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.95
Transmembrane Helix	8	31	0.91
Cytoplasmic	32	40	0.93
Transmembrane Helix	41	64	0.91
Non-Cytoplasmic	65	81	0.84
Transmembrane Helix	82	104	0.86
Cytoplasmic	105	124	0.85
Transmembrane Helix	125	142	0.97
Non-Cytoplasmic	143	182	0.93
Transmembrane Helix	183	203	0.91
Cytoplasmic	204	228	0.86
Transmembrane Helix	229	250	0.91
Non-Cytoplasmic	251	268	0.89
Transmembrane Helix	269	288	0.91
Cytoplasmic	289	360	0.97