YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE06745
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSNVKYFMY EIFIPSIIIL CCVAAFLNFM VVISRLYCKM RSASLELTYS LALSDTWTSI  60
   61 VIGFSLFWNS YKPVVLNIPH SSYCFPLTLE AFRTGGLLTG IFHLVALAFT HYMTIKRPFD 120
  121 HHKVLPIRTI YIMIFFMWAT PPMALMIYFA SNSGQGYQSE KCMGIKFYEN FYFRALVSLI 180
  181 IVFLIILTTI FYIKMLQKIT EVRSKTASNS QTLGASARGR RTVVTAVLIF GTFLIGWMPA 240
  241 SILYILTAES MPLYNKHSVS ITIMSIAVLV SIMAKTLCNP IIYATRIPEI NQFVFQKLLY 300
  301 RVLPGRNPTI RRQSELEPLK TRCSQPNAHS VML

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.92
Transmembrane Helix	12	33	0.92
Cytoplasmic	34	46	0.83
Transmembrane Helix	47	68	0.89
Non-Cytoplasmic	69	90	0.91
Transmembrane Helix	91	113	0.87
Cytoplasmic	114	128	0.85
Transmembrane Helix	129	150	0.91
Non-Cytoplasmic	151	171	0.96
Transmembrane Helix	172	193	0.94
Cytoplasmic	194	222	0.94
Transmembrane Helix	223	246	0.89
Non-Cytoplasmic	247	257	0.84
Transmembrane Helix	258	278	0.89
Cytoplasmic	279	333	0.96