YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	srtx-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLEDLLYEVL PVIGFAIIAS SVLIIIVMRK ETKNSLIFCL CFAISDLLSG IGTLIDGFYG  60
   61 VIVTIYGNTV EAISPFDCLL RAINVPIFLI TDYLHVLLLA AFAIDRLIQI IFPVSYGKFY 120
  121 SYFINWKLFI LLIFASTGLS VQGWVFPLDS RFNSSVRVMS QCRFDEVVGE EYYLKHILTV 180
  181 QWSPIICVGI LFLNIVLYCI RQSKHKWSYN WSEEGKTTKQ LFATIFIRCF LSGLSVHVPL 240
  241 LVIARTTEGH ELIAIKDHII RVSYWIFVII FQPLWHFLIL SSFQSNVYSL FNRYSENTER 300
  301 KWQSANDPPE DGATHLDRHG SPNPFGSWYS MTGNITGEAG LPVGNERSVS FYYQE

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.91
Transmembrane Helix	7	27	0.94
Cytoplasmic	28	35	0.86
Transmembrane Helix	36	58	0.90
Non-Cytoplasmic	59	88	0.83
Transmembrane Helix	89	108	0.80
Cytoplasmic	109	122	0.77
Transmembrane Helix	123	146	0.88
Non-Cytoplasmic	147	179	0.94
Transmembrane Helix	180	200	0.94
Cytoplasmic	201	220	0.94
Transmembrane Helix	221	243	0.72
Non-Cytoplasmic	244	261	0.69
Transmembrane Helix	262	283	0.78
Cytoplasmic	284	355	0.72