YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	col-10
Protein type:	Globular with Signal Peptide
Type Confidence:	0.97
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKFLVTLST GAASIAVLAV LFTVPSLYNT INEVHDEVLD GVSVFRVETD SAWTEMMDIQ  60
   61 ITVTPPTKPR VNPFNSIFRQ KRQTFSGLPA WCQCEPTKPT CPPGPPGPPG QPGAPGTPGA 120
  121 PGPKGDDNTA TFAPLTCAPV SQDCVKCPEG PAGPAGPEGP AGPAGPDGQP GAPGNAGNPG 180
  181 SDGQPGAPGD NGQDGAPGQD GQPGAPGQDG QRGSGAPGGP GAPGNAGPAG PAGQDGAPGQ 240
  241 DGQPGPAGPA GQDGAPGNAG SDGQPGAPGG PGLPGNDAAY CACPPRSAVF VSRH

Type	Start	End	Confidence
Signal Peptide	1	19	0.96
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	294	0.99