YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	col-145
Protein type:	Globular with Signal Peptide
Type Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKILVTFST GAASIAVLAV LFTVPSLYNT INEVHDQVLD GVSVFRVETD SAWTEMMDIQ  60
   61 ITVTPPTKPR VNPFNSVFRQ KRQTFSGLPA WCQCEPTKPT CPPGPPGPPG QPGAPGTPGA 120
  121 PGPKGDDNTA TFAPLTCAQV SQDCVKCPQG PAGPAGPSGP AGPAGPDGQP GFPGQRGNDG 180
  181 FPGAPGAPGD NGQPGTPGQD GFPGQPGADG QRGSGAPGAP GAPGNAGPAG PAGQDGFPGQ 240
  241 DGAPGPAGPA GQDGFPGNAG SDGQPGAPGG PGLPGNDAAY CACPPRSAVF LSRH

Type	Start	End	Confidence
Signal Peptide	1	19	0.89
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	294	0.98