YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE06657
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.83
Transmembrane Helix	10	31	0.80
Non-Cytoplasmic	32	72	0.87
Transmembrane Helix	73	90	0.85
Cytoplasmic	91	96	0.82
Transmembrane Helix	97	117	0.93
Non-Cytoplasmic	118	124	0.81
Transmembrane Helix	125	147	0.92
Cytoplasmic	148	158	0.86
Transmembrane Helix	159	179	0.89
Non-Cytoplasmic	180	186	0.72
Transmembrane Helix	187	208	0.92
Cytoplasmic	209	281	0.97
Transmembrane Helix	282	300	0.95
Non-Cytoplasmic	301	318	0.89
Transmembrane Helix	319	339	0.95
Cytoplasmic	340	345	0.93
Transmembrane Helix	346	365	0.96
Non-Cytoplasmic	366	372	0.87
Transmembrane Helix	373	396	0.92
Cytoplasmic	397	409	0.86
Transmembrane Helix	410	429	0.95
Non-Cytoplasmic	430	436	0.70
Transmembrane Helix	437	458	0.94
Cytoplasmic	459	492	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSDPSLLSW NGIRLLLICS LLTAMTNFPS GFSHTSVNTA VHKLNEYLNN SFTERYRPLD  60
   61 HEEVSLLKSG INSAWYLFQV VGAMSSPFLC DNYGRKVAFA LSIAFMTLAG AMQMLASFTP 120
  121 YSEVLIAGRL IAAVFSPLSD AALILYLQEI SPSSLRGTMS SLYSTGYSTM CLLGMLLGHE 180
  181 GLLGHSLSVL LFVPVIPGIL STAFILWMPD TPKFLLLVKK DKVAALKSLR FFQGSLPDQT 240
  241 LLIDSMEHHH KEDANNNNNS EEKADSATSV MHILKKPHLR KAMMLSVSAA ILTLPFYPIL 300
  301 QNSTFFFTDM GVDMKTSQLA SSFMMVVLTI SSICSTLIID KLPRRILLLT CGSCTVLFLT 360
  361 IFAVSEQMHQ KSIAMGACFG FIMSYGIGVG PVIWSIPPEL SPLADRSMMF CLVYSIHSCL 420
  421 VVVTNFATIP LFMSIGAFSF VLLFAIPSAF ALVYLLVCLP ETSGREIHVI INELKGIVED 480
  481 KEPSRDVITS IA