YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lips-6
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNWITVAVML VAVGFAACGH AVDPHFMQWM QKNLKPEEVK AFVRDELTTG SFGGGVVTTE  60
   61 THDRPVVFVH GLNNEAGSLW KIARDFTNAN YPRQYLFATT WGKGTEPLNL NVAMSCTHVQ 120
  121 HVRRFIETVL KYTGAQKIDV IGYSMGSPIA RKAILGGKCV DNPNVALGPS LHSRVHTYIS 180
  181 VAGANQGSQL CALPFFDICN MKTGLMCNSK FLEDINWFKN YEGSYKAFNL ASTADFVVGY 240
  241 MACGKKASEF TGAHEWKVEG RNHEQTEFDT AAIQLQMLRE STAGLSKSRP SAKLEKKKNN 300
  301 SFSEVKKYLR SKRRDAPQKV KKTVTKKVKR TAVTSAHKKH VNKH

Type	Start	End	Confidence
Signal Peptide	1	21	0.96
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	344	0.99