YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	spe-4
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTLRSISSE LVRSSQLRWT LFSVIANMSL TLSIWIGVYN MEVNSELSKT YFLDPSFEQT  60
   61 TGNLLLDGFI NGVGTILVLG CVSFIMLAFV LFDFRRIVKA WLTLSCLLIL FGVSAQTLHD 120
  121 MFSQVFDQDD NNQYYMTIVL IVVPTVVYGF GGIYAFFSNS SLILHQIFVV TNCSLISVFY 180
  181 LRVFPSKTTW FVLWIVLFWD LFAVLAPMGP LKKVQEKASD YSKCVLNLIM FSANEKRLTA 240
  241 GSNQEETNEG EESTIRRTVK QTIEYYTKRE AQDDEFYQKI RQRRAAINPD SVPTEHSPLV 300
  301 EAEPSPIELK EKNSTEELSD DESDTSETSS GSSNLSSSDS STTVSTSDIS TAEECDQKEW 360
  361 DDLVSNSLPN NDKRPATAAD ALNDGEVLRL GFGDFVFYSL LIGQAAASGC PFAVISAALG 420
  421 ILFGLVVTLT VFSTEESTTP ALPLPVICGT FCYFSSMFFW EQLYG

Type	Start	End	Confidence
Cytoplasmic	1	18	0.94
Transmembrane Helix	19	38	0.95
Non-Cytoplasmic	39	68	0.95
Transmembrane Helix	69	92	0.89
Cytoplasmic	93	99	0.82
Transmembrane Helix	100	119	0.94
Non-Cytoplasmic	120	133	0.93
Transmembrane Helix	134	157	0.89
Cytoplasmic	158	161	0.94
Transmembrane Helix	162	183	0.90
Non-Cytoplasmic	184	189	0.83
Transmembrane Helix	190	209	0.94
Cytoplasmic	210	408	0.95
Transmembrane Helix	409	432	0.83
Non-Cytoplasmic	433	440	0.63
Transmembrane Helix	441	460	0.94
Cytoplasmic	461	465	0.62