YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ncx-3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	24	0.68
Transmembrane Helix	25	48	0.85
Cytoplasmic	49	93	0.68
Transmembrane Helix	94	112	0.67
Non-Cytoplasmic	113	127	0.79
Transmembrane Helix	128	149	0.93
Cytoplasmic	150	159	0.82
Transmembrane Helix	160	182	0.93
Non-Cytoplasmic	183	188	0.87
Transmembrane Helix	189	209	0.92
Cytoplasmic	210	600	0.99
Transmembrane Helix	601	616	0.47
Non-Cytoplasmic	617	629	0.40
Transmembrane Helix	630	652	0.87
Cytoplasmic	653	661	0.32
Transmembrane Helix	662	680	0.53
Non-Cytoplasmic	681	707	0.66
Transmembrane Helix	708	728	0.87
Cytoplasmic	729	739	0.65
Transmembrane Helix	740	760	0.95
Non-Cytoplasmic	761	779	0.67
Transmembrane Helix	780	799	0.92
Cytoplasmic	800	807	0.65

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSANLTCK NGILIPALET TPRNAILYLA GLFYCFLGIA IAADIFMCSI EQITSATKKV  60
   61 KKQKKAGQLV AKEEDEEIDE QYDYVRIWNP TVANLTLMAL GSSAPEILLS IIEIVGNGFK 120
  121 AGDLGPGTIV GSAAFNLFCI SAICVFAVGT QTKRIELYRV FVVTAFFGTF AYIWVFLVLI 180
  181 VITPNVVDVW EAILTLLFFI ILVVVSYAVD AQIWKKKKSS DLQEELEMAQ HDGKVDDQPE 240
  241 KLSDEIKKWA SNLSLNKEEN DVIVDATPSV DTVRRWTRSI SHTYPSLSDE DQAKILAYRV 300
  301 SRTMSHDRLY YRIRAIRQLS SSWRKSEEEE VLKMENQEST DSASRRKTFV EFSARVYRVD 360
  361 ATDETVSLKI ERKGNMESKF TVSYATVNGL AKKDLNFLFK SETLQFNPGE LHKTISIQLI 420
  421 NAANWRPNDV FYVHLKIQDV DEDSKICLGA CNVAHVVKEN AGFSRSFVTR RGGKLKKPLQ 480
  481 VHYETEDVTA KQGDDYTAVK DGILGFEGQE YEKYIDIDVI DDKMDEKDEA FIIELLKVDE 540
  541 PGVSIGTRRK ATITIISDDN VLKNITNVRK LMGHYMRQLR PGKATWKEQI LNAVSVNAGD 600
  601 LANATVSDCI LHALAFPWKF AFAFLPPPTI FYGYPCFVVA LIGIGLVTAV VGDVASIFGC 660
  661 MVGLKDAVTA ITLVALGTSL PDTFASKIAA ESDDTADNAV GNVTGSNSVN VFLGLGLPWV 720
  721 IASLYWASKG ESFRVDAGDL GFSVTVFMIC SVLFLVVLVL RRKLKAFGQG ELGGPFGTKT 780
  781 LSALFFVGLW IVYVGLSIWK MYRKTTN