YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	col-123
Protein type:	Globular with Signal Peptide
Type Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIFSEFLYR MQVSSVTFVA SSLSAIALIS CLLVLSSVYR NVQDYWTELD DQMVEVRKDL  60
   61 DDMWREIMHI QSNSLGSVFR ARRPARGAYD EGDYKEAPPP TSYPSSGGYD EPSAPAHDTA 120
  121 PQAPAGPAPT SPDSCQCQAE NKCKAGPQGA KGAPGLPGPN GVPGLDGKPG LDSLDVEPQA 180
  181 QGTGTCFHCP QGPPGSPGPM GHPGARGMKG SDGQPGQPGK DGDPGKPGEM GPNGFQGKVG 240
  241 PDGFPGEKGG DGRRLIGRPG PKGQKGETGH PGAQGTPGHN GPTGPPGDAG PDGGPGPQGE 300
  301 QGADGGPGSE GKVGRPGRDA EYCHCPARGS HGGSSGGGGG GGGEYKATGG DSYRKKKL

Type	Start	End	Confidence
Signal Peptide	1	36	0.47
N-region	1	27
H-region	28	33
C-region	34	36
Cleavage Site	36	37
Non-Cytoplasmic	37	358	0.93