YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	inx-11
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVMIETFLGM AKYLSPREDD DWSDRLNYLM TPNILLAFSV LISFKQFGGR PIECMFPNKF  60
   61 PGSWEQYAEN YCWSQDTYFV EPTQDVSLLK KEERYTPDRQ LSYYQWVPFF LLLQAAFFRA 120
  121 PSYLWKYFSN HSGIRIHEVV EKAKDSANVE EEVREKNILI LKRHLSSALR FQANMERKKV 180
  181 QVHKTVTFLN FQYSSGFISW IYLFTKVLYF LNVFAQLYLM NYFLGTNRHH WYGFGVVQDI 240
  241 VQGEPWERSG YFPRAAVCDF EVRQVANIQR YSVQCVLVIN IFNEKIFVLL WFWYVILLLS 300
  301 STVSLVQWFI VLVFPCFSKW FVKQHLALST LQNFNQRNSR REDSDVSKFV TQYLHKDGVF 360
  361 VLRMVSSHAG IIFATDLVQA LYEAYDFQDK NKDVQGSPVS DDLQTISTGA ESSIRQRKTR 420
  421 KGSRIEYKAG FPISTSLMPD KDDIESSSTS SEEDQKRVSN VITNI

Type	Start	End	Confidence
Cytoplasmic	1	102	0.65
Transmembrane Helix	103	123	0.62
Non-Cytoplasmic	124	197	0.56
Transmembrane Helix	198	220	0.76
Cytoplasmic	221	289	0.57
Transmembrane Helix	290	311	0.92
Non-Cytoplasmic	312	465	0.52