YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE06440
Protein type:	Transmembrane
Type Confidence:	0.79
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKSDGSVRR RRGEDDDGGR VVPLPEKKHK KVPKSQKPGL ILRILGSTPV KIVLGLLGSL  60
   61 IIAGLLTNRI INAPIKAVEF DLGDKIPLEG VLAVNKRLTD AELLLVDQVY GPESLVLDEK 120
  121 NSKLYAGFKT GIIAEIDMKE GREKIVHAVQ LAQGNHDCDG SYKKMNLCGR PLGLRLSDVG 180
  181 ELVIADAYLG LFAINWQEEK VVKILGAGEL PANNENAAPI KYLNDLDILP DGRVIFTESS 240
  241 TKFDDRDFIL DLFEHRPNGR LLIYDPRKKD LRVLKDGLYF PNGVQLSIEK GMGKNAPWRV 300
  301 LYSEMGLARV MQIWVPRDHY STAPVKTSPL IENLPGYPDN IRLTKSGHLL IPIASHRSEE 360
  361 DRFLEQNPSV REFITKILSP QALGYVANYV ADVEGLVIKV NTETGQIIES YHDQTGRVEA 420
  421 VSIAIDDGKG RMLLGSDVNY YIARAKL

Type	Start	End	Confidence
Cytoplasmic	1	43	0.74
Transmembrane Helix	44	65	0.69
Non-Cytoplasmic	66	447	0.97