YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	dhs-19
Protein type:	Transmembrane
Type Confidence:	0.79
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRALDFVKM VVGTLFFIVL NFFKNFLPNG VLPRKSVEGK KVLITGSGSG IGRLMALEFA  60
   61 KLGAEVVIWD VNKDGAEETK NQVVKAGGKA STFVVDLSQY KDIHKVAKET KEAVGDIDIL 120
  121 INNAGIVTGK KLFDCPDELM EKTMAVNTNA LFYTAKNFLP SMLEKDNGHL VTIASMAGKT 180
  181 GCVGLVDYCA SKHGAIGCHD SIAMEILAQK KYGVNTTLVC PFFIDTGMFH GVTTKCPALF 240
  241 PILEANYAVE CIVEAILTNR PLLCMPKASY LILALIGLLP IESQVMMADF FGTNESMNDF 300
  301 KGRQKND

Type	Start	End	Confidence
Cytoplasmic	1	6	0.50
Transmembrane Helix	7	27	0.58
Non-Cytoplasmic	28	307	0.62