YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sdz-31
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHHEDNSFQS FKTVGSTAHI IPSLHIMSSI TVFSVILILT IFPLVFTSGH LRLEFTSSEN  60
   61 KFLRLITDYS NETLQLTMGE KKTSSFHPTN EQDTIRIGLS TLNRDPVFYK FKLENTGQHL 120
  121 RNIFDQDDVV VFIQSVFECD EGFFGSKCLL KKAPSTSTIA SKMTSTTTMT TTTTTITTST 180
  181 ESEKQASSKG AGLSMGLEHY NSIIIVVLVI IIITLLILIA VFAVLLFSSR SQNQHIIIAG 240
  241 RKSASKCKKL DFEGFEGKSF ERSNDFQYEE PRYTAAPFGS FFSKQSEY

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.76
Transmembrane Helix	21	46	0.83
Cytoplasmic	47	202	0.78
Transmembrane Helix	203	226	0.94
Non-Cytoplasmic	227	288	0.78