YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	acl-2
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENFWSIVVF FLLSILFILY NISTVCHYYM RISFYYFTIL LHGMEVCVTM IPSWLNGKGA  60
   61 DYVFHSFFYW CKWTGVHTTV YGYEKTQVEG PAVVICNHQS SLDILSMASI WPKNCVVMMK 120
  121 RILAYVPFFN LGAYFSNTIF IDRYNRERAM ASVDYCASEM KNRNLKLWVF PEGTRNREGG 180
  181 FIPFKKGAFN IAVRAQIPII PVVFSDYRDF YSKPGRYFKN DGEVVIRVLD AIPTKGLTLD 240
  241 DVSELSDMCR DVMLAAYKEV TLEAQQRNAT RRGETKDGKK SE

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.57
Transmembrane Helix	7	28	0.88
Cytoplasmic	29	33	0.56
Transmembrane Helix	34	55	0.79
Non-Cytoplasmic	56	120	0.67
Transmembrane Helix	121	141	0.59
Cytoplasmic	142	282	0.69