YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	vha-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTDTKQIIA DALLKNEQAM YGPFFGSLGV TSAMAFAAAG SAYGTAKAGT GIASMAVARP  60
   61 DLVMKAIIPV VMAGIVAIYG LVVAVIVSGK VEPAGANYTI NNAFSQFAGG LVCGLCGLGA 120
  121 GYAIGIAGDA GVRALSQQPR MFVGMILILI FAEVLGLYGM IVALILGAT

Type	Start	End	Confidence
Non-Cytoplasmic	1	23	0.73
Transmembrane Helix	24	46	0.85
Cytoplasmic	47	65	0.68
Transmembrane Helix	66	87	0.94
Non-Cytoplasmic	88	106	0.71
Transmembrane Helix	107	126	0.96
Cytoplasmic	127	141	0.69
Transmembrane Helix	142	166	0.89
Non-Cytoplasmic	167	169	0.67