YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	unc-7
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.23
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGSSSNPEP PLLSRIIGVP PPPPPRAPTT ALVLRVPTVD SPSKKKQQPD TRNKYQETAL  60
   61 RDKKTRTPLE KARHLDNLPS YQAQKLLDGS HQLRIDSHHV GSAGHGAGQG HGHKKEFGPA 120
  121 MILYYLASAF RALYPRLDDD FVDKLNYYYT TTILASFALL VSAKQYVGFP IQCWVPATFT 180
  181 DAMEQYTENY CWVQNTYWVP MQEDIPREIY SRRNRQIGYY QWVPFILAIE ALLFYVPCIL 240
  241 WRGLLYWHSG INLQGLVQMA CDARLMDSEI KTRTVYTMAR HMQDEVQLTN IDRQGHSRSC 300
  301 FSNLQLGANC GRHCGCYVTM LYIGIKVLYS ANVLLQFFLL NHLLGSNDLA YGFSLLKDLM 360
  361 HAIEWEQTGM FPRVTLCDFE VRVLGNIHRH TVQCVLMINM FNEKIFLFLW FWFLTCGIVT 420
  421 VCNTMYWILI MFIPSQGMSF VRKYLRVLPD HPAKPIADDV TLRKFTNNFL RKDGVFMLRM 480
  481 ISTHAGELMS SELILALWQD FNNVDRSPTQ FWDAEHGQGT ID

Type	Start	End	Confidence
Cytoplasmic	1	146	0.61
Transmembrane Helix	147	161	0.23
Non-Cytoplasmic	162	218	0.53
Transmembrane Helix	219	245	0.78
Cytoplasmic	246	321	0.65
Transmembrane Helix	322	345	0.50
Non-Cytoplasmic	346	405	0.52
Transmembrane Helix	406	430	0.91
Cytoplasmic	431	522	0.50