YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	col-129
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTARYLVSI AAAASTFAVL ASIVSLVYLV NDVNNYYDDV TRNIENFKDD ANTVWHQMMT  60
   61 VVPQGGKQRQ VYESLFGRTK RQAAQCNCGA NSAASNCPAG PPGPPGAPGE DGDHGLVGED 120
  121 GTPGADGNLG VPLSANGCIV CPAGPPGPPG QPGQNGQRGS DGQPGQDAMG GGQGAPGPQG 180
  181 PAGDNGQPGR PGNDGRPGAP GAPGTRSVGR PGTAGSPGPQ GPPGQNGNDG QPGNDGAPGQ 240
  241 PGQPGPDGHP GQPGNAGPPG TPGAAGQPGG DAAYCPCPSR SSVVRAQAAV ARNRHVAARH 300
  301 RSVSRRKAVA ARRSKARRVV AAKHRAVAKR HRAVQKA

Type	Start	End	Confidence
Signal Peptide	1	21	0.98
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	337	0.99