YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	glt-3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.99
Transmembrane Helix	7	27	0.94
Non-Cytoplasmic	28	44	0.90
Transmembrane Helix	45	67	0.88
Cytoplasmic	68	79	0.81
Transmembrane Helix	80	101	0.91
Non-Cytoplasmic	102	187	0.94
Transmembrane Helix	188	206	0.94
Cytoplasmic	207	221	0.66
Transmembrane Helix	222	242	0.78
Non-Cytoplasmic	243	258	0.79
Transmembrane Helix	259	283	0.89
Cytoplasmic	284	290	0.78
Transmembrane Helix	291	314	0.79
Non-Cytoplasmic	315	340	0.77
Transmembrane Helix	341	361	0.67
Cytoplasmic	362	370	0.49
Transmembrane Helix	371	392	0.55
Non-Cytoplasmic	393	532	0.51

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGMKKDLLLV LTIESVVLGV VLGFVIRPFN PSNDTISLIG FPGEIFMQIV EMMILPLIMS  60
   61 SVISALAQVR ARDARRIGIV TIIYYMITTF LATFTGIILV SSIHPGDPEL IHELGEGTLE 120
  121 NTALSTLDTF LDQIRNMFPE NIIQATFQQV QTEYMPIKPS RVRNATSMNM TSEVLHKQTL 180
  181 TYTNEMNVLG LIVFCSGFGI ILSILGDQAR LMINFFIVLD AIIMRWISAL MWCYPIGILS 240
  241 LVCKNIIDID NLTETAQALA MYVVTVICGL MIHSLLTLPL LYFLVTKKSP FAFMTGMLQA 300
  301 LATAFGTASS GATLPVTFRA LEENLKIDRR VTRFVLPLGA TITMDGTALY EAVAVIFIAQ 360
  361 LHNIKLSLMD LVTISITTTV ASIGSGSVPA GLDTIVIVLT TVGLPAKDLS LLLTVDWLLD 420
  421 RIRTSVNVLG DSFGAGIIHH LTRSSLLEAD TDELIRQIRE DIDILNNPHQ DTLPISHHSV 480
  481 QSTIQNTQNA MQAPHVYSKS ARASFAPIPN EEERKALLKE SIALNKSDTH IV